PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC9462_p1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bHLH
Protein Properties Length: 675aa    MW: 73373.3 Da    PI: 6.4395
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC9462_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH11.50.000585395761355
                 HHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
         HLH  13 RdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                 R+ i +++ eLrel+P+ +      K s  + Le++++++  Lq
  RrC9462_p1 539 RQLIQDRIKELRELVPNgS------KCSIDSLLERTIKHMLFLQ 576
                 67799************55......5566667777777777776 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142153.8E-1977173IPR025610Transcription factor MYC/MYB N-terminal
CDDcd000839.24E-4521577No hitNo description
PROSITE profilePS5088811.28526575IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.49E-5539582IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.0E-4539587IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 675 aa     Download sequence    Send to blast
MGKRQISQDE VGPPINPRAG LRREQAGRGV CTRVILYMKI KVLTMGDAYY DNDHGHSNSP  60
EVQGCSVIPK DMHAGAHDSL GLAVAKMAYH VYSLGEGIVG QVAVSGEHQW VFPEYNGNCH  120
SASEFHNVWE SQIYAGVKTI LVVAVGPCGV VQLGSLLKVD EDVTLVNHIR HMFLALKDPM  180
ADHAAGLMQC NMNNSLCLPK IPSEGLNVEA YPNSSGEVGK AMDVKELTQY KLRRSDSMPY  240
NTTPSCLLME KAAQVVQGSS CGSYSSVTFG FPIDLVDATR HENQVGTSIV SDAPHVGMTS  300
GCKDPNLHQH VMKNHVLNNN TSSSALATEA ERLISGQSYT CLDSSSYQNE VFQLEGKCES  360
SRRLDALISS GYPFAGSELL EALGSGFKQT SRGGHEELVK SEHASTTGPT CDMSHSQLTF  420
DPGPENLLDA VVANVCHSDG NARDDILSSR SVHSLLTSMA EPSGQKMHSV AMMKQLPLAE  480
MDTQQNPSDI CGAFSSIGFS STCPSSSSDQ FQTSLEMMPK KIKKRAKPGE SSRPRPRDRQ  540
LIQDRIKELR ELVPNGSKCS IDSLLERTIK HMLFLQNVTK HADKLSKSAS AKMQQKETGT  600
QGSSCAVEVG GHLQVCSIIV ENLNKQGMVL IEMLCEECSH FLEIANVIRS LDLIILRGVT  660
EAQGEKTWIC FVVEV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3529850.0AK352985.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-15-P09.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013636652.10.0PREDICTED: transcription factor bHLH155-like
SwissprotQ58G010.0LHWL3_ARATH; Transcription factor bHLH155
TrEMBLA0A0D3C3E30.0A0A0D3C3E3_BRAOL; Uncharacterized protein
STRINGBra021715.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM20832030
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31280.30.0conserved peptide upstream open reading frame 7